Question: GFA to Fasta file
2
marcela.uliano • 50 wrote:
Hey guys,
Does anyone have a script (or a awk line) to extract fasta reads from a GFA file?
I've runned this miniasm in some Pacbio reads I have, and I would like to extract the final unitigs from the final file I have (which is a GFA file) in the fasta format!
Thanks a lot guys!
Awesome!!
Thank you so much!
Hi,
could you describe what does GFA stand for? I don't know about this format.
GFA is the Graphical Fragment Assembly format. Here is a post by Heng Li (@lh3) on this: https://lh3.github.io/2014/07/19/a-proposal-of-the-grapical-fragment-assembly-format.