Hello,
Quick question: How to calculate the P value for the enrichment of my dataset in a certain feature?
I have calculated (using bedtools), that 5% of my dataset "A" intersects with a genomic feature of interest, and I calculated that for a random subset of genomic regions of the same size the intersection would be 11%. Thus, my dataset seems to have a strong depletion of this feature in comparison with genome-average. How do I calculate a P-value for this?
Thanks!