removal of gi numbers from msa file
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8.0 years ago
willingtone2 ▴ 10

hello guys , i need some help, i have this msa file containing 1570 seqs i need to remove the gi numbers and retain the accession numbers please help:below is asample

gi|8393762|ref|np_058552.1|/1-782 mtsiiklttlsgvqeesalcyllqvdefrflldcgwdehfsvdiidslrkhvhqidavll gi|685228433|gb|aio05253.1|/1-482 gvwsgmvgtslsmliraelshpgmfigndqiynvivtahafimiffmvmpimiggfgnwl gi|685228539|gb|aio05306.1|/1-482 gvwsgmvgtslsmliraelshpgkfigndqiynvivtahafimiffmvmpimiggfgnwl

thanks willingtone

alignment • 1.4k views
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Your capslock button can be found under the tab button and above the left shift.

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WHAT HAVE YOU TRIED !!???

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8.0 years ago
5heikki 11k

HOW ABOUT

cut -f4- -d "|" inputFile > outputFile
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