Question: removal of gi numbers from msa file
1
gravatar for willingtone2
3.9 years ago by
willingtone210
willingtone210 wrote:

hello guys , i need some help, i have this msa file containing 1570 seqs i need to remove the gi numbers and retain the accession numbers please help:below is asample

gi|8393762|ref|np_058552.1|/1-782 mtsiiklttlsgvqeesalcyllqvdefrflldcgwdehfsvdiidslrkhvhqidavll gi|685228433|gb|aio05253.1|/1-482 gvwsgmvgtslsmliraelshpgmfigndqiynvivtahafimiffmvmpimiggfgnwl gi|685228539|gb|aio05306.1|/1-482 gvwsgmvgtslsmliraelshpgkfigndqiynvivtahafimiffmvmpimiggfgnwl

thanks willingtone

alignment • 938 views
ADD COMMENTlink modified 3.9 years ago by Michael Dondrup47k • written 3.9 years ago by willingtone210
2

Your capslock button can be found under the tab button and above the left shift.

ADD REPLYlink written 3.9 years ago by WouterDeCoster43k
2

WHAT HAVE YOU TRIED !!???

ADD REPLYlink written 3.9 years ago by Pierre Lindenbaum126k
1
gravatar for 5heikki
3.9 years ago by
5heikki8.6k
Finland
5heikki8.6k wrote:

HOW ABOUT

cut -f4- -d "|" inputFile > outputFile
ADD COMMENTlink written 3.9 years ago by 5heikki8.6k
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