i downloaded the reference chromosomes (1 to 22, X & Y) but i wonder where can i find chromosomes dataset for individuals ?
See these old posts. I hope they may help you.
Where Can I Get Whole Human Genomes?
Sources Of Publicly Available Human Whole Genome Sequence Data
Another way to find data:
Human Genome Files
This is also useful for training, teaching, etc.
Human NGS Cancer Data for tool development, algorithm benchmarking, teaching, pipeline evaluation, etc.
This is useful post about limitations:
Human Genome Reference characteristics
Probably this is all that is available in UCSC-database:
Another useful site
was mentioned by @Neilfws in this post:
A: Shorter Sequences In The Human Genomic Dna Download From Ucsc Genomic Browser We
Data from the 1000 genomes project in the ENA.
Do you know if data is available assembled (which is what OP is asking)?
Good point. Probably not.
I wonder what you exactly want to get out of this, just a fastafile with variant alleles? What with heterozygous positions?
Guess what you are looking for is not readily available, so I wonder about your biological question.
some operations related to SNPs (genotype to phenotype for example).
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