SNP core definition

Question

[felipe.melis]

Hello, I am new in the field and i need a definition for the SNP Core or some reference about it (papers or something). I have reviewed many papers but no one stops to define the concept clearly.

Thanks

[natasha.sernova]

See these posts and articles:

Whole Genome Snp And Core Genome Snp

How To Find Core Genome Snp

A: Comparative Microbial Genomics

Minimum Core Genome Sequence Typing of Bacterial Pathogens: a Unified Approach for Clinical and Public Health Microbiology

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3719615/

See this pipeline:

https://github.com/apetkau/core-phylogenomics

Population structure and minimum core genome typing of Legionella pneumophila

http://www.nature.com/articles/srep21356

When Whole-Genome Alignments Just Won't Work: kSNP v2 Software for Alignment-Free SNP Discovery and Phylogenetics of Hundreds of Microbial Genomes

http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0081760

[Devon Ryan]

Do you mean a SNP in a "core gene"? I assume you work on bacteria.

[felipe.melis]

I'm trying to build a phylogeny using snp, I have read some papers that use a core snp but apparently is not same logic behind a core genome (Yes i am working with bacteria, sorry).