what are the algorithms of bioinformatics related to computer science students
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8.1 years ago

i want to know the algorithms in bioinformatics useful for computer science students, please answer it.

sequencing genome next-gen gene • 2.3k views
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8.1 years ago
Medhat 9.8k

beside prvious answers

  • Genome assembly algorthims generally
  • De-brujin graph assembly
  • RNA secondary structure prediction
  • Motif Finding

more could be found in

Bioinformatic Algorithms Books

http://www.renyi.hu/~miklosi/AlgorithmsOfBioinformatics.pdf

http://www.comp.nus.edu.sg/~ksung/algo_in_bioinfo/

https://www.cl.cam.ac.uk/~pl219/Bioinformatics2015.pdf

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7.9 years ago
Chirag Parsania ★ 2.0k

I would strongly recommend you to follow which is specific for bioinformatics algorithm. One of the most useful and toughest course I have ever done. It's freely available from world's renowned universities.

https://www.coursera.org/specializations/bioinformatics.

Cheers Chirag

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8.1 years ago
sacha ★ 2.4k

For alignment:

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Could i ask : what is Burrows Wheeler Transformation ?

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Have you read the document linked by sacha?

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8.1 years ago

I suggest this book: Beginning Perl for Bioinformatics, By James Tisdall, Publisher: O'Reilly Media. There are many examples in it and easy to understand biological stuff for computer science students.

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7.9 years ago

Could anyone here say sth about the Burrows Wheeler Transform ? Thanks .

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