Is there an C++ tool to implement GATK ?
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4.1 years ago
winter_li ▴ 60

HI , I am familiar with C++, so is there a tool to implement GATK using C++ ?

Best!

GATK genome SNP next-gen • 1.2k views
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system("java -Xmx5g -jar GenomeAnalysisTK.jar");
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What do you mean with "implement"?

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That should mean "re-code" but we have no additional context :)

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That's what it means, but I don't think it's what OP means :-)

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HI, It' means to re-write GATK to use C++ or other language.

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GATK is a set of numerous tools using map/reduction of data. Some tools already exist as a C++ program (e.g: SelectVariants can be compared to bcftools view ).

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