Hello I am currently trying to map large files on a huge computing cluster and am getting an Error that's not very informative. I am submitting a job per: sbatch jobMUS1.sh --mem=1200000mb that calls another script (alignSTARpipeMUSViral2.s) that uses STAR for mapping for each of my fastq-files. The first STAR-call cancels with :
/naslx/projects/t1172/di36dih/Control/MUS/alignSTARpipeMUSViral2.sh: line 19: 12217 Killed /naslx/projects/t1172/di36dih/Linux_x86_64_static/STAR --readFilesIn $srr*fastq --genomeDir $genome --runThreadN 20 --quantMode GeneCounts --outReadsUnmapped Fastx --outFileNamePrefix $srr.mus.
It only shows the line of the STAR-call in the script , Killed and the STAR-call. Did anyone ever experience that kind of Error when working on a cluster? Is it an Error message from STAR or from the cluster? The memory should not be the problem.