Fetching corresponding sequences from a fasta file using coordinates
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5.1 years ago
sharadlko1 • 0

Hi everyone, I am new to python/biopython therefore I need this help. I want to use python/biopython to fetch the corresponding sequences from a fasta file having multiple sequences using coordinates such as unique identifier, start position, end position, strand information stored in a csv file. Please let me know the script. Thanks a lot.

python biopython fasta • 1.7k views
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Have you tried to search for past threads on this topic here?

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Please let me know the script.

That's not how it works. You need to show some effort from your side as well.
Also, why does it have to be python?

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No need to use Python. Here is a procedure and ready-made script for you to use with your BED file and reference genome of choice. Good luck!

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You cannot ask for a script here. But you can ask for help resolving any issue with your script/pseudo code or discussing the basic idea what you are going to implement.

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