Question: DE analysis using single cell RNA-seq data
1
gravatar for Sara
3.1 years ago by
Sara90
Sara90 wrote:

I have single cell RNA-seq data (.sra files) and want to do DE analysis. I have found a lot tools available. do you know what is the most precise one. also I am working with R.

rna-seq • 1.5k views
ADD COMMENTlink modified 15 months ago by Jennifer Pham380 • written 3.1 years ago by Sara90
2
gravatar for Mike
3.1 years ago by
Mike1.6k
UK
Mike1.6k wrote:

Have a look..

https://www.bioconductor.org/help/workflows/simpleSingleCell/

ADD COMMENTlink written 3.1 years ago by Mike1.6k
1
gravatar for theobroma22
3.1 years ago by
theobroma221.1k
theobroma221.1k wrote:

http://www.rna-seqblog.com/cellview-interactive-exploration-of-high-dimensional-single-cell-rna-seq-data/

ADD COMMENTlink written 3.1 years ago by theobroma221.1k
0
gravatar for Jennifer Pham
15 months ago by
Jennifer Pham380
San Diego CA
Jennifer Pham380 wrote:

Check this if you want a UI:

ADD COMMENTlink modified 15 months ago by ATpoint35k • written 15 months ago by Jennifer Pham380
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