Question

Big Data Translation

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6.9 years ago

l.souza ▴ 80

What tool can I use to translate a big amount of sequences of DNA into Amino Acids?

translation sequences genome proteome dna • 1.7k views

ADD COMMENT • link updated 6.9 years ago by GenoMax 141k • written 6.9 years ago by l.souza ▴ 80

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Do you need to simply translate DNA into amino acids, or do you need to predict coding regions in transcripts? TransDecoder does the second task.

ADD REPLY • link 6.9 years ago by h.mon 35k

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Simply translate DNA into amino acids.

ADD REPLY • link 6.9 years ago by l.souza ▴ 80

score 3 · Accepted Answer · 2017-05-25

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6.9 years ago

GenoMax 141k

EMBOSS TransSeq or SixPack.

For a lot of data you would want to download EMBOSS for running it locally.

ADD COMMENT • link 6.9 years ago by GenoMax 141k

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Don't you know any local software that runs in Windows?

ADD REPLY • link 6.9 years ago by l.souza ▴ 80

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EMBOSS for windows, here:

ftp://emboss.open-bio.org/pub/EMBOSS/windows/mEMBOSS-6.5.0.0-setup.exe

ADD REPLY • link 6.9 years ago by h.mon 35k

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that runs in Windows?

If that is an important requirement for you then you should mention that in your question.

In addition, if the answer was helpful you should upvote it, if the answer resolved your question you should mark it as accepted. Upvote|Bookmark|Accept

ADD REPLY • link 6.9 years ago by WouterDeCoster 47k