I used the tool Pannzer to get GO information for my gene list in a non model species (monarch butterfly). I know Pannzer doesn't do enrichment analyses so I repeated using the whole monarch genome. Does anyone know a tool that accepts protein ID and corresponding GO terms for enrichment analysis rather than just a gene list from a limited number of species? If not, is there a way to do this analysis myself which doesn't involve going GO term by GO term?
thanks a lot.