I'm kind of new to this space-- a friend of mine says he uses SNPeff for all his exome annotations, and he doesn't know of any other popular tools for this purpose.
I'm annotating some human exomes and I am curious about what else is out there. A search gave me a lot of answers, but I don't know which are popular in the community. Are there gaps the SNPeff leaves that other effect predictors fill? Thank you so much for reading my post!