Question: Protein Sequence charecterization using pBLAST
0
gravatar for Optimist
2.8 years ago by
Optimist90
India
Optimist90 wrote:

Hello Dear Biostars Community,

I've got a set of 11,985 protein sequences (maximum length is 2152 aa and minimum is 59 aa).

Now, the problem is how do I characterize these 11,985 protein sequences with respect to the name of the protein, it's role and origin.

Are there any options like NCBI BLAST, parameters to be used for effective results. Tools and software that can be employed. Literature help is also fine.

Please enlighten me about the way ahead to achieve this.

Thanking you all

yours

Optimist

ADD COMMENTlink modified 2.8 years ago by h.mon29k • written 2.8 years ago by Optimist90
2
gravatar for h.mon
2.8 years ago by
h.mon29k
Brazil
h.mon29k wrote:

InterProScan is probably the best resource for protein annotation. You can try dammit or Trinotate, two good pipelines for transcriptome annotation - they should work with protein only data.

You could also explore this OmicTools list.

ADD COMMENTlink written 2.8 years ago by h.mon29k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1146 users visited in the last hour