Entering edit mode
6.9 years ago
saj98
▴
140
Hello everyone
I am using the following command which already explained in the nature protocol paper
stringtie –e –B -p 8 -G stringtie_merged.gtf -o ballgown/WS021/WS021.gtf Bam/WS021.bam
The issue it gave me the following error
Error: input file –e cannot be found!
However, when I delete -e and -B options, it run fine. Can anyone explain for me the problem? I appreciate your time and help
Has the above command line been copy / pasted from your scripts? Note that
–e
and–B
(with dash) are different from-e
and-B
(with hyphen), and command line parameters are indicated by hyphens, not dashes.This looks like a positional parameters/named parameters error. Maybe the program is not equipped to handle
-e
in the position you're passing it in?Try putting the -e and -B at the end of the command, maybe.