Question: Micro array cancer data analysis and Visualization
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gravatar for bio94
12 months ago by
bio9440
bio9440 wrote:

Is there any microarray analysis visualisation package which can be used in the R environment? The package that performs both analysis and visualization. Thank you.

ADD COMMENTlink written 12 months ago by bio9440

what kind of microarray do you have? Do you have some examples of the expected plots?

ADD REPLYlink written 12 months ago by said342770
0
gravatar for Kevin Blighe
12 months ago by
Kevin Blighe33k
Republic of Ireland
Kevin Blighe33k wrote:

Curiously enough, I've just posted one here but in the context of network analysis: Network plot from expression data in R using igraph

Limma allows you to conduct normalisation, differential expression, and has basic plotting functionality, such as MA plot generation.

If you look at my other posts, you'll find other ways to generate other plots:

ADD COMMENTlink written 12 months ago by Kevin Blighe33k
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