Question: Micro array cancer data analysis and Visualization
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gravatar for paul.elliot1994
7 months ago by
paul.elliot19940 wrote:

Is there any microarray analysis visualisation package which can be used in the R environment? The package that performs both analysis and visualization. Thank you.

ADD COMMENTlink written 7 months ago by paul.elliot19940

what kind of microarray do you have? Do you have some examples of the expected plots?

ADD REPLYlink written 7 months ago by said342760
0
gravatar for Kevin Blighe
7 months ago by
Kevin Blighe21k
University College London Cancer Institute
Kevin Blighe21k wrote:

Curiously enough, I've just posted one here but in the context of network analysis: Network plot from expression data in R using igraph

Limma allows you to conduct normalisation, differential expression, and has basic plotting functionality, such as MA plot generation.

If you look at my other posts, you'll find other ways to generate other plots:

ADD COMMENTlink written 7 months ago by Kevin Blighe21k
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