Question: NCBI bacterial Morphology, environment and temperate data
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gravatar for microfuge
2.5 years ago by
microfuge1.7k
microfuge1.7k wrote:

Hello, I remember that a long time back data about bacterial morphology, environment and growth temperate (thermophile or mesophile) used to be available from NCBI genomes ftp site. The site is also mentioned in the methods section of one of the papers papers . This data is still available on the web page (for example for e.coli here . I am unable to find it in the ftp site as the link is dead. Would be grateful if someone knows the new location in the FTP site of NCBI. Many Thanks!

ncbiftp ncbi • 604 views
ADD COMMENTlink modified 2.4 years ago by Biostar ♦♦ 20 • written 2.5 years ago by microfuge1.7k

As to environmental bacteria, see my answer to this post:

where can I get environmental bacteria genome in fasta format (as many as possible)?

Bacterial phenotype:

Is there a free database of bacterial phenotype information by species name?

Temperature Sensitivity: I didn't find any links for all bacteria, just some separate papers.

The Warmer the Weather, the More Gram-Negative Bacteria - Impact of Temperature on Clinical Isolates in Intensive Care Units

http://journals.plos.org/plosone/article?id=10.1371%2Fjournal.pone.0091105

Temperature Sensitivity Conferred by ligA Alleles from Psychrophilic Bacteria upon Substitution in Mesophilic Bacteria and a Yeast Species

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4784036/

ADD REPLYlink modified 2.4 years ago • written 2.4 years ago by natasha.sernova3.7k

I use bioproject xml for such purpose. ftp://ftp.ncbi.nlm.nih.gov/bioproject/

you need plenty of RAM to parse xml, though.

ADD REPLYlink modified 2.4 years ago • written 2.4 years ago by fishgolden420
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