I have a script(Blast_helper.sh) that tries to create blast database of the reference Fasta files(ALLSeqs.faa) in UBUNTU. I do this with help of this command: "Blast_helper.sh -i ALLSeqs.faa", but I get this error:
Error in tempfile() using template /tmp/parXXXXX.par: Parent directory (/tmp/) does not exist at /usr/bin/parallel line 3280. Do someone know the reason for this error? I will be very grateful for your help.
What is the output of
Hello :) This is the output:
ls: cannot access '/tmp': No such file or directory
looks like someone removed your /tmp directory. /tmp is the standard UNIX directory for putting temporary files, it should always be there. Ask your system administrator to fix it or see https://askubuntu.com/questions/178751/accidentally-deleted-tmp-folder. You might experience other problems on that system. I agree that is not really a bioinformatics problem.
Thank you so much for your help. I'm really grateful.
FYI: Script source is https://github.com/ballesterus/UPhO/blob/master/Blast_helper.sh