I am trying to call copy number from mouse data using HMMcopy.
Created the wig files for my BAM samples. Also created mm10_gc.wig using gcCounter (HMMcopy). I am facing issues while creating the big wig file.
generateMap.pl -w 40 -i mm10 mm10.fa > mm10.bigwig
Getting the following error
HMMcopy_0.1.1/util/mappability/internal/fastaToRead missing, try recompiling...