Question: What is Read Group platform??
0
gravatar for 2012secondseason
3 months ago by
2012secondseason10 wrote:

Hello. In tool 'AddOrReplaceGroups''s arguments - --RGPL, --RGLB, --RGPU, --RGSM, what do they mean by each one?

In case of. RGBL, should i set a name of read group library now or I should fill in exsisting name?

And I wanna know exactly what other things mean. Please explain in detail. Thank you in advance.

tool readgroup • 201 views
ADD COMMENTlink modified 3 months ago by rse50 • written 3 months ago by 2012secondseason10
1

Hi, I have multiple read groups in my bam file. I want to replace one read group and not the other. How should i proceed? Picard tools would replace all ? Will linux commands work?

ADD REPLYlink written 3 months ago by rse50
1

ask this as a new question please. And please, take some time to validate all your previous questions.

If an answer was helpful you should upvote it, if the answer resolved your question you should mark it as accepted.

Upvote|Bookmark|Accept

ADD REPLYlink written 3 months ago by Pierre Lindenbaum110k

Ok sure. Thanks a lot.

ADD REPLYlink written 3 months ago by rse50

please validate or comment all your previous questions.

ADD REPLYlink written 3 months ago by Pierre Lindenbaum110k
3
gravatar for jean.elbers
3 months ago by
jean.elbers290
jean.elbers290 wrote:

See the following for more guidance https://software.broadinstitute.org/gatk/documentation/article.php?id=6472

ADD COMMENTlink written 3 months ago by jean.elbers290

Nice. Thank you so much!

ADD REPLYlink written 3 months ago by 2012secondseason10
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