Question: What is Read Group platform??
0
gravatar for 2012secondseason
2.7 years ago by
2012secondseason30 wrote:

Hello. In tool 'AddOrReplaceGroups''s arguments - --RGPL, --RGLB, --RGPU, --RGSM, what do they mean by each one?

In case of. RGBL, should i set a name of read group library now or I should fill in exsisting name?

And I wanna know exactly what other things mean. Please explain in detail. Thank you in advance.

tool readgroup • 1.3k views
ADD COMMENTlink modified 2.7 years ago by rse90 • written 2.7 years ago by 2012secondseason30
1

Hi, I have multiple read groups in my bam file. I want to replace one read group and not the other. How should i proceed? Picard tools would replace all ? Will linux commands work?

ADD REPLYlink written 2.7 years ago by rse90
1

ask this as a new question please. And please, take some time to validate all your previous questions.

If an answer was helpful you should upvote it, if the answer resolved your question you should mark it as accepted.

Upvote|Bookmark|Accept

ADD REPLYlink written 2.7 years ago by Pierre Lindenbaum131k

Ok sure. Thanks a lot.

ADD REPLYlink written 2.6 years ago by rse90

please validate or comment all your previous questions.

ADD REPLYlink written 2.7 years ago by Pierre Lindenbaum131k
3
gravatar for jean.elbers
2.7 years ago by
jean.elbers1.5k
jean.elbers1.5k wrote:

See the following for more guidance https://software.broadinstitute.org/gatk/documentation/article.php?id=6472

ADD COMMENTlink written 2.7 years ago by jean.elbers1.5k

Nice. Thank you so much!

ADD REPLYlink written 2.7 years ago by 2012secondseason30
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