Question: I need a rs file for ovine (sheep) SNP array data
0
gravatar for hosein_salehi6
2.3 years ago by
hosein_salehi60 wrote:

I have data of ovine high-density 600K snp array. I want to change names of SNPs to rs format.

So I need a rs file . How I can receive rs file for my data?

snp ovine genome • 773 views
ADD COMMENTlink modified 2.3 years ago by Emily_Ensembl21k • written 2.3 years ago by hosein_salehi60
1

Is this a commercial chip? Are you not able to find the annotations from the vendor?

ADD REPLYlink written 2.3 years ago by genomax87k

The data should have the MAP file, if not you can explore UCSC Table Browser. http://genome.ucsc.edu/cgi-bin/hgTables

ADD REPLYlink written 2.3 years ago by zx87549.4k
2
gravatar for Emily_Ensembl
2.3 years ago by
Emily_Ensembl21k
EMBL-EBI
Emily_Ensembl21k wrote:

ftp://ftp.ensembl.org/pub/current_variation/vcf/ovis_aries/

ADD COMMENTlink written 2.3 years ago by Emily_Ensembl21k
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