Question: I need a rs file for ovine (sheep) SNP array data
0
gravatar for hosein_salehi6
17 months ago by
hosein_salehi60 wrote:

I have data of ovine high-density 600K snp array. I want to change names of SNPs to rs format.

So I need a rs file . How I can receive rs file for my data?

snp ovine genome • 533 views
ADD COMMENTlink modified 17 months ago by Emily_Ensembl19k • written 17 months ago by hosein_salehi60
1

Is this a commercial chip? Are you not able to find the annotations from the vendor?

ADD REPLYlink written 17 months ago by genomax71k

The data should have the MAP file, if not you can explore UCSC Table Browser. http://genome.ucsc.edu/cgi-bin/hgTables

ADD REPLYlink written 17 months ago by zx87548.2k
2
gravatar for Emily_Ensembl
17 months ago by
Emily_Ensembl19k
EMBL-EBI
Emily_Ensembl19k wrote:

ftp://ftp.ensembl.org/pub/current_variation/vcf/ovis_aries/

ADD COMMENTlink written 17 months ago by Emily_Ensembl19k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2020 users visited in the last hour