Question: GC count calculation of thousnds genes in several region
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gravatar for Kian
27 days ago by
Kian40
Kian40 wrote:

Hi I have a list of more than 1000 genes, i want to calculate GC count of these genes in several region, like in exone, intron, 3utr, 5utr, upstream, downstream. and comparison them about different in gc count. Any one know how i can do this calculation in simple and fastest way!

gc count gc calculation gene • 119 views
ADD COMMENTlink written 27 days ago by Kian40
1

How To Calculate A Region‘ Gc Content In Reference Genome??

ADD REPLYlink written 27 days ago by genomax47k

Also one from Aaron Quinlan, BEDTools developer: Calculating Gc Content For All Ccds

ADD REPLYlink written 27 days ago by Kevin Blighe19k

geecee from EMBOSS also perfectly works for this purpose.

ADD REPLYlink written 26 days ago by Sishuo Wang120

Thanks, Sishuo Wang, would you please paste the link of this tool here?

ADD REPLYlink written 25 days ago by Kian40

EMBOSS geecee.

ADD REPLYlink written 25 days ago by genomax47k
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