Question: GC count calculation of thousnds genes in several region
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gravatar for Kian
5 months ago by
Kian40
Kian40 wrote:

Hi I have a list of more than 1000 genes, i want to calculate GC count of these genes in several region, like in exone, intron, 3utr, 5utr, upstream, downstream. and comparison them about different in gc count. Any one know how i can do this calculation in simple and fastest way!

gc count gc calculation gene • 235 views
ADD COMMENTlink written 5 months ago by Kian40
1

How To Calculate A Region‘ Gc Content In Reference Genome??

ADD REPLYlink written 5 months ago by genomax57k

Also one from Aaron Quinlan, BEDTools developer: Calculating Gc Content For All Ccds

ADD REPLYlink written 5 months ago by Kevin Blighe30k

geecee from EMBOSS also perfectly works for this purpose.

ADD REPLYlink written 5 months ago by Sishuo Wang140

Thanks, Sishuo Wang, would you please paste the link of this tool here?

ADD REPLYlink written 5 months ago by Kian40

EMBOSS geecee.

ADD REPLYlink written 5 months ago by genomax57k
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