I need an script to select specific sequences among many results of a local blast output file. Briefly, I have an blast output file containing many alignments in different frame shifts with E-value and bit scores. Each sequence has different frame shift results.
Now, I want to select just the frame shifts with the highest score in each alignment and the best alignments and based bit score or E-value. No limitation for the type of file.
Anyone can introduce me a way to learn how prepare such scripts as I am new in Perl scripting, or if there is a file to be edited for my goal.
Thank you in advance.