Hi everyone I was wondering what kind of tool you use to assemble your genome.? I already tried IDBA_ud but to make it works I have to reduce de number of read.
Then I tried ALLPATH-LG but it is not suitable for my data, I only have paired-end read R1 and R2 in fastaq format.
I also tried Masurca but there is a problem in the process for a lot of people and the devellopers seem to do not answer about this issue.
So, maybe you know a good programm to do it with my data?
The 2 fasta files are comming from an illumina Hiseq 3000 150bp and the genome size of my specie is around 1.5 GB. Any clue would be kind.
Have a nice day