I am looking for an efficient way to get 1000 Genomes data for ~70k dbSNP ids. (I am primarily interested in putative impact and allele frequencies.)
Is there a convenient way to do this?
A good solution would be some way to query 1000 Genomes programmatically and in bulk (as opposed to one dbSNP id at at time), but I have not found it yet.
Another possibility would be do download files from 1000 Genomes that I can process locally, but I have not been able to locate a reasonably-sized download that has the information I'm looking for. I could download all of ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/20130502, but that could take a long time, and pretty much fill up my hard disk, without any guarantee that what I'm looking for is in that massive download.