Question: Mauve Contig Mover
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gravatar for theshreyanshparakh
2.2 years ago by
theshreyanshparakh0 wrote:

Hello everyone.

I aligned a scaffold bacterial genome with a reference genome using Mauve Contig Mover. But I'm unable to understand which file contains my reordered draft genome. I have attached the screenshot of the AlignmentN folder.

Alignment3 Folder

mauve genome alignment • 913 views
ADD COMMENTlink modified 2.2 years ago by zx87549.7k • written 2.2 years ago by theshreyanshparakh0

Hi,

Please see a tutorial by @Ram explaining how to insert an image in a Biostar post: How to add images to a Biostars post

ADD REPLYlink written 2.2 years ago by Sej Modha4.7k

You want the folder with the highest N.

That’s the last iteration of the moved contigs. If I remember correctly, there should be a fasta file in there with your reordered contigs.

ADD REPLYlink written 2.2 years ago by Joe18k

The image linked has no screenshot of folder. Besides, don't send a screenshot of a folder, list its contents as text.

ADD REPLYlink written 2.2 years ago by h.mon31k

Also that screenshot just shows a (/shudder/) MATLAB window...

ADD REPLYlink modified 2.2 years ago • written 2.2 years ago by Joe18k
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