I am trying to obtain all the species names from the blast output file which contains the accession numbers. I tried to use
efetch command from NCBI edirect.
The command is:
efetch -db taxonomy -id CP00001 but it gives an error saying
500 Can't connect to proxy. I have already set "https_proxy" as an environment variable in my bash.rc file. But I am facing the same error.
How should I fix this ?
Is there a way in which I can get the species names directly when running blast ? I tried to run it with taxdb but it gave me all N/As in the species column.
Thanks for your help.