Question: gffread executable file
0
gravatar for karlaf.jara
9 weeks ago by
karlaf.jara0 wrote:

Hello !! I want to use gffread to convert a gff3 file to gtf. However, when I try to install it in linux, the executable file (purple diamond), it does not work. I would like to know if the tool is maintained. I use the next commands to install.

cd /some/build/dir
  git clone https://github.com/gpertea/gclib
  git clone https://github.com/gpertea/gffread
  cd gffread
  make release

Thank you.

rna-seq tool • 137 views
ADD COMMENTlink modified 9 weeks ago by kristoffer.vittingseerup1.4k • written 9 weeks ago by karlaf.jara0

it does not work

That is not a meaningful error message. Please elaborate. With the provided commands, I could compile the tool without errors. Also for the future, please use the format bar to indicate code.

f

ADD REPLYlink modified 9 weeks ago • written 9 weeks ago by ATpoint13k

purple diamond

did you try to click on any icon using a graphical file explorer ?(!)

ADD REPLYlink written 9 weeks ago by Pierre Lindenbaum116k

Have you read the documentation on how to use this tool?

ADD REPLYlink written 9 weeks ago by WouterDeCoster36k
1
gravatar for kristoffer.vittingseerup
9 weeks ago by
European Union
kristoffer.vittingseerup1.4k wrote:

If you dont want to build it from source you can just download a precompiled Cufflinks version from here. That binary includes a gffread.

ADD COMMENTlink written 9 weeks ago by kristoffer.vittingseerup1.4k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1209 users visited in the last hour