Question: gffread executable file
0
gravatar for karlaf.jara
14 months ago by
karlaf.jara0 wrote:

Hello !! I want to use gffread to convert a gff3 file to gtf. However, when I try to install it in linux, the executable file (purple diamond), it does not work. I would like to know if the tool is maintained. I use the next commands to install.

cd /some/build/dir
  git clone https://github.com/gpertea/gclib
  git clone https://github.com/gpertea/gffread
  cd gffread
  make release

Thank you.

rna-seq tool • 465 views
ADD COMMENTlink modified 14 months ago by kristoffer.vittingseerup3.0k • written 14 months ago by karlaf.jara0

it does not work

That is not a meaningful error message. Please elaborate. With the provided commands, I could compile the tool without errors. Also for the future, please use the format bar to indicate code.

f

ADD REPLYlink modified 14 months ago • written 14 months ago by ATpoint29k

purple diamond

did you try to click on any icon using a graphical file explorer ?(!)

ADD REPLYlink written 14 months ago by Pierre Lindenbaum126k

Have you read the documentation on how to use this tool?

ADD REPLYlink written 14 months ago by WouterDeCoster43k
1
gravatar for kristoffer.vittingseerup
14 months ago by
European Union
kristoffer.vittingseerup3.0k wrote:

If you dont want to build it from source you can just download a precompiled Cufflinks version from here. That binary includes a gffread.

ADD COMMENTlink written 14 months ago by kristoffer.vittingseerup3.0k
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