Question: gffread executable file
0
gravatar for karlaf.jara
7 months ago by
karlaf.jara0 wrote:

Hello !! I want to use gffread to convert a gff3 file to gtf. However, when I try to install it in linux, the executable file (purple diamond), it does not work. I would like to know if the tool is maintained. I use the next commands to install.

cd /some/build/dir
  git clone https://github.com/gpertea/gclib
  git clone https://github.com/gpertea/gffread
  cd gffread
  make release

Thank you.

rna-seq tool • 273 views
ADD COMMENTlink modified 7 months ago by kristoffer.vittingseerup2.0k • written 7 months ago by karlaf.jara0

it does not work

That is not a meaningful error message. Please elaborate. With the provided commands, I could compile the tool without errors. Also for the future, please use the format bar to indicate code.

f

ADD REPLYlink modified 7 months ago • written 7 months ago by ATpoint19k

purple diamond

did you try to click on any icon using a graphical file explorer ?(!)

ADD REPLYlink written 7 months ago by Pierre Lindenbaum121k

Have you read the documentation on how to use this tool?

ADD REPLYlink written 7 months ago by WouterDeCoster40k
1
gravatar for kristoffer.vittingseerup
7 months ago by
European Union
kristoffer.vittingseerup2.0k wrote:

If you dont want to build it from source you can just download a precompiled Cufflinks version from here. That binary includes a gffread.

ADD COMMENTlink written 7 months ago by kristoffer.vittingseerup2.0k
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