Question: Perturbation Cancer cell line data
0
gravatar for jmannhei
6 months ago by
jmannhei0
jmannhei0 wrote:

Hi all,

I was wondering if anybody new of a database of perturbation experiments in cancer cell lines where there are pre and post treatment RNA-SEQ or microarray data. I looking for particularly for Methotrexate, Vinblastine, Vorinostat, Cisplatin, and Gemcitabine. Thanks

cancer rna-seq cytotoxics gene • 270 views
ADD COMMENTlink modified 6 months ago by Pappu1.9k • written 6 months ago by jmannhei0

Try: https://ewels.github.io/sra-explorer/ Use a combination of keywords to browse SRA datasets.

ADD REPLYlink modified 6 months ago • written 6 months ago by genomax70k
1
gravatar for Pappu
6 months ago by
Pappu1.9k
Pappu1.9k wrote:

You can find it at https://clue.io/

ADD COMMENTlink modified 6 months ago • written 6 months ago by Pappu1.9k
1

The link looked suspicious but it does actually point to Connectivity Map (perturbation-driven gene expression dataset) hosted at Broad Institute (at least at this time).

ADD REPLYlink modified 6 months ago • written 6 months ago by genomax70k
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