Perturbation Cancer cell line data
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3.9 years ago
jmannhei ▴ 10

Hi all,

I was wondering if anybody new of a database of perturbation experiments in cancer cell lines where there are pre and post treatment RNA-SEQ or microarray data. I looking for particularly for Methotrexate, Vinblastine, Vorinostat, Cisplatin, and Gemcitabine. Thanks

RNA-Seq gene cancer cytotoxics • 923 views
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Try: https://ewels.github.io/sra-explorer/ Use a combination of keywords to browse SRA datasets.

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3.9 years ago
Pappu ★ 2.1k

You can find it at https://clue.io/

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The link looked suspicious but it does actually point to Connectivity Map (perturbation-driven gene expression dataset) hosted at Broad Institute (at least at this time).

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