I recently came across a paper where the authors found a novel pseudogene (human). I don't think they mention the genomic location for it, but they did submit the RNA sequence for it in Genbank (they think its a lncRNA). I have RNA-seq data from some patients, and I want to check the levels of this (possible) lncRNA in those samples. Is there a way I can do it?
One solution could have been to look at the reads in IGV for this locus (after loading the bam file from the data), but I don't think the genomic location for this gene is provided in the paper. Is there another way?