I didn't find beagle imputation and phasing tutorial, therefore, try to give one sine I am using it right now. And hope to receive some feedback.
Prepare beagle 5.0 and corresponding database
Prepare beagle phasing reference for EUR samples (my samples are EUR samples)
Prepare PBS script to run beagle
Post-imputation filiter (DR2>0.7)
Thanks for sharing! May I ask if Beagle imputation works for more than 1 node? That is, when specify:
Does Beagle run on both 2 nodes with 32 threads?