Hi everybody,
I want to remove all sites that are homozygous reference (0/0) per each row in the vcf file and get the output with vcf format. So, I simply used zgrep -v "0[/|]0" < file1.gz.vcf > output.vcf
. However, it sounds that many variants is removed. Just for make sure, please kindly let me know if I did right?
Thanks