STRING does not support networks larger than 2000 nodes.
1
0
Entering edit mode
21 months ago
XBria ▴ 80

Hi,

A beginner question, I upload a file containing DEG to STRING-db. An error pops up as :

"We do not support networks larger than 2000 nodes. Please go back and reduce the number of proteins that you provide as input and specify the input organism. "

I need to keep the number of DEG unchanged. (2217 genes)

Please help me !

Thanks

Network string • 575 views
ADD COMMENT
1
Entering edit mode

Hi First the select the organism and try it. Further, the Interpretation of such dense network is biologically significant?, My suggestion increases the cut-off value of logFC and try again.

ADD REPLY
2
Entering edit mode
21 months ago
Prakash ★ 2.1k

Have you tried using StringApp in Cytoscape. That should work.

ADD COMMENT
0
Entering edit mode

No, I have not, You mean for number of proteins more than 2000 we always need to use apps or package ?

ADD REPLY
1
Entering edit mode

Yes. Web servers do not have infinite resources so data upload is often limited to a certain size. Large data sets are best handled locally.

ADD REPLY
0
Entering edit mode

Good to know :) , Thanks

ADD REPLY

Login before adding your answer.

Traffic: 1858 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6