Hello, I re-edit this question, orginal question:
GISTIC2.0 can find CNV across a set of samples. I want to know it's there other tools can do the same thing? Thanks.
GISTIC2.0 is more suitable for array CGH data, for example
GISTIC2 requires markers file(
-mk) which WES/WGS can't afford(We can build by-hand, but this making
-mk useless, right?). It's there any tool implement
GISTIC to WES/WGS data?
cnvkit to get cnv seg file by the way.