Question: SARS Cov2 NGS data analysis pipeline
0
gravatar for arash.iranzadeh1980
3 months ago by
arash.iranzadeh198030 wrote:

Hi,

Anyone can introduce tools (pipelines) that are suitable for analysis of the coronavirus NGS data (Illumina MiSeq platform) including quality control, phylogeny and variant calling?

Thanks!

ADD COMMENTlink modified 3 months ago by Akshay Zawar10 • written 3 months ago by arash.iranzadeh198030

Past threads: Protocol for genome assembly of Sars-cov-2 sequences
introduce a tool for fast identification of SARS-CoV-2 and other microbes from sequencing data

ADD REPLYlink modified 3 months ago • written 3 months ago by genomax92k

Thank you very much for the link and tutorial!

ADD REPLYlink written 3 months ago by arash.iranzadeh198030
1
gravatar for Akshay Zawar
3 months ago by
Akshay Zawar10
Pune, India
Akshay Zawar10 wrote:

Hi,

You can refer to this link: https://github.com/CDCgov/SARS-CoV-2_Sequencing#sequencing

This GitHub page from the CDC provide in-depth information on NGS practices and Bioinformatics approaches to sequence Sars-Cov-2.

ADD COMMENTlink written 3 months ago by Akshay Zawar10

Many thanks! Seems useful.

ADD REPLYlink written 3 months ago by arash.iranzadeh198030
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