Question: SARS Cov2 NGS data analysis pipeline
0
gravatar for arash.iranzadeh1980
11 days ago by
arash.iranzadeh198030 wrote:

Hi,

Anyone can introduce tools (pipelines) that are suitable for analysis of the coronavirus NGS data (Illumina MiSeq platform) including quality control, phylogeny and variant calling?

Thanks!

ADD COMMENTlink modified 11 days ago by Akshay Zawar10 • written 11 days ago by arash.iranzadeh198030

Past threads: Protocol for genome assembly of Sars-cov-2 sequences
introduce a tool for fast identification of SARS-CoV-2 and other microbes from sequencing data

ADD REPLYlink modified 11 days ago • written 11 days ago by genomax87k

Thank you very much for the link and tutorial!

ADD REPLYlink written 11 days ago by arash.iranzadeh198030
1
gravatar for Akshay Zawar
11 days ago by
Akshay Zawar10
Pune, India
Akshay Zawar10 wrote:

Hi,

You can refer to this link: https://github.com/CDCgov/SARS-CoV-2_Sequencing#sequencing

This GitHub page from the CDC provide in-depth information on NGS practices and Bioinformatics approaches to sequence Sars-Cov-2.

ADD COMMENTlink written 11 days ago by Akshay Zawar10

Many thanks! Seems useful.

ADD REPLYlink written 11 days ago by arash.iranzadeh198030
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1623 users visited in the last hour