Question: Chipseq Data On Prostate Cancer
1
gravatar for Bioinfosm
8.5 years ago by
Bioinfosm620
earth
Bioinfosm620 wrote:

Am looking for chipSEQ data available for prostate cancer. Some of the encode data includes chipSEQ but is other tissues or cell lines.

Moreover, for the chipSEQ data, is there a well accepted process to identify the motif within the peak regions; because with the chipSEQ data, I would like to first identify the peak regions (if its not already available for that dataset) and then identify the binding sites within those peak regions, because those are the important regulatory nucleotides.

Thanks!

next-gen chip-seq cancer • 2.4k views
ADD COMMENTlink written 8.5 years ago by Bioinfosm620
4
gravatar for JC
8.5 years ago by
JC12k
Mexico
JC12k wrote:

Have you tried looking in the NCBI:GEO? http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE20042

ADD COMMENTlink written 8.5 years ago by JC12k

No I had not checked. Thanks!

ADD REPLYlink written 8.5 years ago by Bioinfosm620

This respond concluded me to find a proper data set after 10 hours. Thank you ! Seriously I REALLY APPRECIATE YOUR CONTRIBUTION!! 

ADD REPLYlink written 5.2 years ago by morovatunc460
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