How to extend contigs from single-end reads?
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13 months ago
A_heath ▴ 60

Hi all,

I have raw sequencing datas of metagenomes and all of them are single-end reads. I would want to prolong/extend contigs. I thought of PRICE (Ruby, JG., et al, 2013) but it only works with paired-end reads ... Do you have any recommendation on what software could I use?

Thank you for your much appreciated help in advance!

Have a great day

contigs contig extension single-end reads • 562 views
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13 months ago
GenoMax 107k

You can take a look at tadpole.sh from BBMap suite. A guide is available here.

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Thank you for your suggestion genomax!

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13 months ago
shelkmike ▴ 540

There are many such tools. For example:

  1. TASR.
  2. Mapsembler2.
  3. DistributedNucleatingAssembler
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Thank you so much shelkmike!

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