Download multiple protein sequences from IMG IDs
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10 months ago
Audrey ▴ 60

Hi all,

I tried to look online before asking here but couldn't find any reliable solutions.

I have thousands of IMG gene IDs in a simple .txt file. I would like to download the protein sequences associated.

Is there an automatic way to do that?

Thank you for your help!

img ids download genes • 288 views
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Check if this solution is still valid: A: Retrieve the aa sequence for a given IMG gene ID

Always post a few examples when referring to ID's of any kind and their source.

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Thank you for your answer. The solution you mentioned is still valid but doesn't solve my main issue here. How can I add to the cart thousand of genes using their IMG IDs? Or is there any other way such as fastq-dump for the NCBI database?

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The API for JGI portal is at this link. This may be the only way to do bulk downloads.

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