Question: Mouse To Human Coordinates
2
gravatar for Ashutosh Pandey
5.3 years ago by
Philadelphia
Ashutosh Pandey11k wrote:

Is there any way to convert mouse coordinates(mm9) into human coordinates(hg19). I know it is not possible to do it for all the coordinates as there is no one-to-one thing between them but if the homolog genes or particular exon in the homolog genes is pretty identical in length between both the genomes then how can we get human coordinates for the mouse coordinates.

mouse human • 2.8k views
ADD COMMENTlink modified 15 months ago by katherine4450 • written 5.3 years ago by Ashutosh Pandey11k

HI, I have to convert a "big" file with CLIPseq data from hg38 to mm10 and liftOver is not able to give me the result. Not because there is a problem in the file, just because it's "too big"... But it's only 14Mo. How can I solve this issue? Thanks

ADD REPLYlink written 15 months ago by Jerome0

Did you try a local installation of liftOver? (first hit on google: http://genometoolbox.blogspot.be/2013/11/install-liftover-locally-on-unix.html)

ADD REPLYlink written 15 months ago by WouterDeCoster22k

ask this as a new question please.

ADD REPLYlink written 15 months ago by Pierre Lindenbaum99k

We can definitely use a feature which will allow moderators to move such questions to a new post. Looks like you can't do that either as "site admin".

ADD REPLYlink written 15 months ago by genomax34k
5
gravatar for Pierre Lindenbaum
5.3 years ago by
France/Nantes/Institut du Thorax - INSERM UMR1087
Pierre Lindenbaum99k wrote:

If you have the coordinates of the exons, the UCSC liftOver can convert them from mm9 to hg19: http://genome.ucsc.edu/cgi-bin/hgLiftOver

ADD COMMENTlink written 5.3 years ago by Pierre Lindenbaum99k
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