Question: How To Deal With Multiple Transcription Start Sites [Refseq || Chipseq]
1
gravatar for Sukhdeep Singh
6.7 years ago by
Sukhdeep Singh9.7k
Netherlands
Sukhdeep Singh9.7k wrote:

Guys, How does the refSeq deals with the genes with multiple TSS. How is this information quoted into the list, which we obtain from the ucsc tables (refSeq table). If there is no information about this in the list, how the refSeq people decide which one is most stable or bound more by PolII. I want to stress that this is different from the same genes with different number of promoters. Is there any better database which gives this information. I am interested in Mouse.

Thanks

Sukhi

P.S. I was generating the protein's (factor) abundance plot at TSS and this might give a different result for the case which I asked above.

chip-seq genes refseq rna-seq ucsc • 2.9k views
ADD COMMENTlink modified 6.7 years ago by cdsouthan1.8k • written 6.7 years ago by Sukhdeep Singh9.7k
2
gravatar for Leonor Palmeira
6.7 years ago by
Leonor Palmeira3.7k
Liège, Belgium
Leonor Palmeira3.7k wrote:

When I was working on transcription start sites a couple of years ago, I used DBTSS for this information, as it was not available in the UCSC tables.

ADD COMMENTlink modified 6.7 years ago • written 6.7 years ago by Leonor Palmeira3.7k
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