Question: How To Convert Ccds Ids To Swiss Prot Ids
0
gravatar for Nandini
5.8 years ago by
Nandini650
London
Nandini650 wrote:

Hello,

I have a list of over 10,000 human ccds ids, is there any way I can convert or retrieve swiss prot ids for the same ?

Thank you.

convert • 1.3k views
ADD COMMENTlink modified 5.8 years ago by cdsouthan1.8k • written 5.8 years ago by Nandini650
2

Please search this site using the term "biomart" for the many answers to the problem of ID mapping.

ADD REPLYlink modified 5.8 years ago • written 5.8 years ago by Neilfws48k
0
gravatar for cdsouthan
5.8 years ago by
cdsouthan1.8k
cdsouthan1.8k wrote:

As mentioned Biomart is a good option but there are some gotchas, The key one is many CCDS to one SwissProt because of splicing, but they will not all match (CCDS <> VARSPLIC). You could try CCDS > Ensembl gene > UniProt

ADD COMMENTlink modified 5.8 years ago • written 5.8 years ago by cdsouthan1.8k

Question states that they are human.

ADD REPLYlink written 5.8 years ago by Neilfws48k
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