Question: Rna Secondary Structure Homolgy Search
2
gravatar for Nicolas Rosewick
7.3 years ago by
Belgium, Brussels
Nicolas Rosewick8.8k wrote:

Hi,

I've several sequences and I want to check if there is known secondary structure into these sequences. Is there a tool to check if there are structure homolgies with known transcripts (mRNA,tRNA,miRNA,...)

Thanks

N.

rna homology • 1.7k views
ADD COMMENTlink modified 6.6 years ago by JC10k • written 7.3 years ago by Nicolas Rosewick8.8k
1
gravatar for Medhat
7.3 years ago by
Medhat8.7k
Texas
Medhat8.7k wrote:

I think this software may help PHMMTS it will Do local alignment to an unfolded sequence by folded structure.

ADD COMMENTlink modified 6 months ago by RamRS27k • written 7.3 years ago by Medhat8.7k
0
gravatar for JC
6.6 years ago by
JC10k
Mexico
JC10k wrote:

Try Sean Eddy's Infernal with RFAM models.

ADD COMMENTlink written 6.6 years ago by JC10k
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