I received a text file which has following entries and I assume this is a Bowtie aligned map files and I would like to visualize the same on a local genome browser.
HWI-ST863:202:C2014ACXX:4:1101:2197:1894 1:N:0:NTTTTTCG + NM_011363 3354 TGTTGTTGTTGTTTTAAACAAAATGGAAAAGCATAA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 1
HWI-ST863:202:C2014ACXX:4:1101:3133:1962 1:N:0:NAATAAGA + NM_175190 729 GTGTGGTTGTCCCTTTTGTTAATAAACATATGAGCA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 0
HWI-ST863:202:C2014ACXX:4:1101:5688:1889 1:N:0:NTATCTGG + NM_020606 4378 CTGTCTTGATCCATTTCTTCTGCATGATTCCAGAAA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 0
HWI-ST863:202:C2014ACXX:4:1101:9703:1907 1:N:0:NTTAAAGG + NM_026030 397 GCTTCTGATGACTTAGATGATTTGAACTTCTTTAAT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 0
I would like to validate if the reads are enriched towards the 3' end of the mRNA (genes). I would also like a local genome browser like tool for this purpose. How can I see this in a genome browser like IGV?