I have a number of VCF files, where each VCF file possesses variant data for a single patient (this is the way Illumina provides their data). Is it possible to combine all of the data for the patients into one VCF file? If so, how? Can I use plink/seq to do this?!
Any suggestions and leads would be extremely helpful.
Thanks. Is it possible to do this with plink/seq too?
I keep getting the following error when I try to use this command (even after loading the module). Do you have any idea what the problem might be?
Please check that your locale settings: LANGUAGE = (unset), LC_ALL = (unset), LC_CTYPE = "UTF-8", LANG = "en_US.UTF-8" are supported and installed on your system. perl: warning: Falling back to the standard locale ("C"). sh: tabix: command not found which: no tabix in ... The command "tabix" not found, please add it to your PATH
Please read the error message. It says you don't have
tabixin your PATH - do you have tabix/bgzip installed and accessible?