Need: Working Workflow Pipeline For Agilent Mirna Analysis Using Agimicrorna

Question

[Rm]

I am trying to use "AgiMicroRna" package for agilent miRNA analysis.

I tried using the workflow suggested by authors but no success.

I have issues with readMicroRnaAFE; probe-mapping/choords etc.

Data come from "COMPACT" output of agilent feature extractor.

Does any one have "working" workflow for the same?.

It is Follow up of this Question

[Michael]

What's that error message behind 'no success'? How should we help if you don't give us all the information.

[Sean Davis]

Consider writing to the bioconductor mailing list, also. And be sure to read the bioconductor posting guide before posting.

Answer 1

[UnivStudent]

Hey there! Was having a similar problems with the package and came across this answer on a blog Adapting the R AgiMicroRna Package to work with COMPACT AFE output files. Hope it works out for you!