Need: Working Workflow Pipeline For Agilent Mirna Analysis Using Agimicrorna
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11.5 years ago
Rm 8.2k

I am trying to use "AgiMicroRna" package for agilent miRNA analysis.

I tried using the workflow suggested by authors but no success.

I have issues with readMicroRnaAFE; probe-mapping/choords etc.

Data come from "COMPACT" output of agilent feature extractor.

Does any one have "working" workflow for the same?.

It is Follow up of this Question

agilent mirna bioconductor workflow • 3.3k views
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What's that error message behind 'no success'? How should we help if you don't give us all the information.

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Consider writing to the bioconductor mailing list, also. And be sure to read the bioconductor posting guide before posting.

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10.2 years ago
UnivStudent ▴ 430

Hey there! Was having a similar problems with the package and came across this answer on a blog Adapting the R AgiMicroRna Package to work with COMPACT AFE output files. Hope it works out for you!

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