Hi, I'm going to discover unknown motifs in my DNA sequences. While googling I faced many tools which deals with "transcription factor binding sites","regulatory sequences", and ... I'm not sure to use of these tools for my purpose. Could you please introduce me the best approach.
Best; Esmaeel
Time to get the skeletons out of the closet. Back in the days I wanted to seed the site with questions. There were no users, no answers, it was barren. So I created a user called Fabio and I posted a question that, in the end collected many useful answers.
I suggest that the original poster consult Biostar post number 4 for answers:
Finding common motifs in sequences
As for user number 3, Fabio I felt awful for cheating and I have never used him again. But he has been kept as a memento.
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You seem to lack a clearly-defined research problem. Deal with that before worrying about software.
You might start here for focused answers already posted to Biostars: https://www.google.com/search?q=motif+discovery+site:biostars.org