I have a list of a few hundred SNPs given by rs number. I want to get the chromosome and position for each SNP. For example:
input: rs4477212 output: chr1:82154
I have a list of a few hundred SNPs given by rs number. I want to get the chromosome and position for each SNP. For example:
input: rs4477212 output: chr1:82154
you can download this information from NCBS dbSNP site. On the other hand, you can also use the SNP-nexus site. Very useful.
Thanks I got it! http://www.ncbi.nlm.nih.gov/projects/SNP/dbSNP.cgi?list=rslist
Use the variation dataset, short variation and indels. Then filter by rsID and choose the position as an attribute.
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duplicate of: How to get the chromosome physical position from rs numbers? , Get SNP position from a python interface.
I created an iOS app for this exact purpose, I welcome any feedback.
http://chromioapp.com