Peaks And Nearby Genes
Consider if you have a peak file from (as an example from MACS tool) and you are interested in knowing which are the refseq genes present near each peak.
how it can be done?
Thank you in advance.
In Bioconductor, the ChIPpeakAnno package is one way; the biomaRt, rtracklayer, org*, GenomicFeatures, and GenomicRanges packages provide flexibility for more advanced annotation.
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