HI everyone, I am new in genome assembly. I did my Denovo assembly with Spades( SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing) and i also did the assembly with GapFiller (GapFiller: a de novo assembly approach to fill the gap within paired reads) .
Now if i merge the contig file from both the program which program i can use for this job??
After merging the contig the quality of draft genome will increase or not ??
If any one have experience please help me out ..
Thank you advance